How to visualise/explore Hi-C maps per chromosome at 100Kb and 40Kb
From hereenter link description here I can download Hic maps per chromosome at 100kb and 40 kb . I have no expertise with Hic data. I was wondering how to exploit these files which extension is ."abc". I'd like to have coordinates in text file with regions of interaction and strength/statistics.
• 1,878 views
•
link
updated
by
Alex Reynolds
•
written
by
ZheFrench
•
written
by
ZheFrench
1 answer
If you can transform the interaction data from whatever format they are currently in, turning them into cooler format, you could use HiGlass to visualize. Can you contact the authors and ask them what format their data are in or if they can offer data in alternative form?
• 0 views
•
link
written
by
Alex Reynolds
Log in to answer this question.
More posts like this
-
Find "phased segments" from trio VCF?
written by cmdcolin
-
Map to get cpg probe id provided chr, start and end position
written by dilrajkaur766 •
-
HELP- analysis RNa-seq from GEO
written by PM •
-
Problem with the output of Deeptools PlotProfile: a strange pattern of repetitive summits
written by Alireza •
-
Handling single-cell RNA-seq data with very few cells and possible conversion to bulk-like RNA-seq
written by mb86 •
-
Hi-C: getting intervals from "A Compendium of Chromatin Contact Maps Reveal Spatially Active Regi…
written by Pierre Lindenbaum
-
How to understand this kind of heatmap
written by Proxy Agent •
-
Weird 1kb-periodic artifact in ChIP-Seq data (including input)
written by Ryan Thompson
-
How to find Significant Trans- Interactions in HiC data
written by komal.rathi
-
Where To Find Encode Dnase I Footprint Data
written by joshualevipayne
