Creating CIBERSORTx signature matrix
Hi all, I want to acknowledge that there are several discussions on Biostars regarding how to build a signature matrix or how to normalize datasets for CIBERSORTx. Nevertheless I would still appreciate some clarification on what I am trying to acheive.
I am trying to build a signature matrix from the single cell data matrix file found on this GEO database page (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE157640). Below is a screenshot of what the data look like.
I would greatly appreciate if someone could point me in the right direction.
• 898 views
•
link
written
by
FrankStarling •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Deconvolution using cibersortx, help with real example
written by Dyno •
-
Create single cell reference for MuSIC
written by FrankStarling •
-
COnversion of REF_ID into gene name (or the other way around)
written by klabunde •
-
What to do with Seurat metadata and counts in separate text files?
written by 5b54ea20 •
-
GEO Matrix File Help
written by Melvin •
-
NCBI GEO/GSM/SRA conventions: Is raw data a part of the SRA or a supplementary file?
written by abe •
-
Finding Gene Symbols for Probes in Raw Data
written by samet •
-
How can we calculate expression value from raw data
written by lmanohara99 •
-
Combine .CEL files from RAW GEO compressed file into 1 matrix
written by landscape95
-
How To Get Cdf For A Specific Cel
written by fbrundu
