This is a test version of Biostars. For the public version, visit https://www.biostars.org.
circRNA database of TCGA

Hello,

TANRIC is a database of exploration lncRNA in cancer.

Anyone know is there a database explore of circRNA in cancer which is similar to TANRIC?

Thanks in advance!

Yue

gene
• 4,495 views • link
updated by EagleEye EagleEye • written by yueli7 yueli7

1 answer

This is recent article with cancer specific circRNAs and you can find associated database here. Detailed review on individual cancer associated circular RNAs here.

• 0 views • link
written by EagleEye EagleEye

Hello, EagleEye,

Thank you so much for your response!

This database recurred the cancer specific circRNAs from normal and cancer cell lines.

Is there any database has information of circRNA from patients which are come from TCGA?

Thanks in advance!

Yue

• 0 views • link
written by yueli7 yueli7

Sorry I do not have much idea on circRNAs from TCGA.

• 0 views • link
written by EagleEye EagleEye

Log in to answer this question.

More posts like this
  • database of cancer and normal cell lines
    written by yueli7 yueli7
    Hello, Cancer Cell Line Encyclopedia (CCLE) is a database which contains only cancer cell lines. Is there a database contain both cancer and normal cell …
  • heart antigen
    written by yueli7 yueli7
    Hello Everyone, I know some antigen databases. Such as: http://www.imtech.res.in/raghava/antigendb, https://violinet.org/protegen/index.php. Anyone has any idea that I can find heart atigen? Thanks in advance for …
  • database on patients treated with CAR T-cell therapies
    written by yueli7 yueli7
    Hello, Is there anyone know about any database on patients treated with Chimeric Antigen Receptor (CAR) T-cell therapies? Thank you in advance for great help! …
  • software of single-cell RNA-seq from fastq or fasta
    written by yueli7 yueli7
    Hello, Anyone know which software or pipeline can treat the single-cell RNA-seq data from the first beginning? That means from the form of single or …
  • name of the figure
    written by yueli7 yueli7
    Hello, Everyone, Anyone know the name of the figure? Thanks in advance for any help! Best, Yue <img src="https://i.ibb.co/NZbSgDy/Screenshot-from-2019-12-12-15-56-59.png" alt="Screenshot-from-2019-12-12-15-56-59" border="0" />
  • question about seurat figure PC_heatmap
    written by yueli7 yueli7
    Hello, Does anyone know what is the mean of the following figure? I know it is heatmap, what is the meaning of four blocks? It …
  • protein pathway analysis software or tools
    written by yueli7 yueli7
    Hello, Anyone know any software that can analysis protein pathway? Just like: GProX, a User-Friendly Platform for Bioinformatics Analysis and Visualization of Quantitative Proteomics Data …
  • demographic of people
    written by yueli7 yueli7
    Hello, I want to study the differentially expressed genes of Asian, African and European people. Any ideas of which database I can download? Thanks in …
  • software to draw the picture
    written by yueli7 yueli7
    Hello, Anyone who know which software can draw this picture? One package in Microsoft office? Thanks in advance? Yue ![enter image description here][1] [1]: https://i.ibb.co/W0K8mkx/Capture.jpg
  • normal sample of ovarian cancer in TCGA dataset
    written by yueli7 yueli7
    Hello, I want to compare the fallopian tube (normal) and cancer samples form TCGA ovarian cancer patients. Where can I find the fallopian tube (normal) …