Read simulators for Ion Torrent platform specific for WES

I am looking for tools which can simulate reads specifically for data obtained from Ion AmpliSeq Whole Exome Sequencing.

simulation wes ion torrent amliseq

• 1,612 views • link

written 8.3 years ago by world_genesis 0

0 answers

No answers yet.

More posts like this

Normalize Together Total RNA-SEQ vs Ampliseq protocols reads
written 3.6 years ago by Fernando 0

Hello, We would like to analyze together RNA-seq data obtained from two protocols (ampliseq, and total-RNAseq) sequenced by ion-torrent. Anyone has done this before? Would …
Mapping Human Genome
written 4.8 years ago by adarsh 8

Hi, I have a fastq file of human ampliseq genome from Ion Torrent sequencing. I need to align this to hg19 reference, Which tool will …
How to analyze Exome Seq data for GWAS
written 6.1 years ago by Kumar 17

Hi, I have got exome seq data from Ion Torrent platform. I am looking to analyze these data for GWAS studies. Please suggest pipelines and …
Trimming tool for Ion Torrent AmpliSeq data
written 6.3 years ago by sarastrafella.ss 2

Hi everyone! I'm a student in Bioinformatics and I've to choose a trimming tool for my NGS data from Ion AmpliSeq panel sequenced with Ion …
Can Breakdancer be applied on Paired end Exome Sequencing data for germline copy number/sv detectio…
written 8.5 years ago by gsr9999 33

Dear Biostar Leaders, We have a Paired End Sequencing Reads from Whole Exome Sequencing run generated on a cell line that is known to contain …
Tools for Copy Number Variation analysis from ion Proton data.
written 8.9 years ago by pradyumna Jayaram 21

Hello Everyone, Can anyone suggest the tool to detection of copy number variation from the data obtained from Ampliseq exome sequencing Iontorrent proton platform. I …
What are the best tools/practices for CNV (structural variation) detection/analysis for Illumina fa…
written 9.3 years ago by Irina Astrovskaya 2

Hi, I am looking for the current state-of-the-art tools/practices for CNV (structural variation) detection/analysis for family (trio) data produced by Illumina. I will have data …
ion ampliseq comprehensive cancer panel
written 10.5 years ago by mittu1602 20

I am searching for a dataset with "Homo Sapiens" organism based on **ion ampliseq comprehensive cancer panel** for detection of "CNVs" in "whole exome sequencing". …
Simulating single end reads with dwgsim
written 10.8 years ago by kautilya 43

<p>I am using dwgsim to simulate ion torrent reads. It seems the reads coming from an ion torrent machine are single end. However looking at …
NGS CNVtools with no controls
written 11.9 years ago by hellbio 52

Hi, There are a lot of NGS tools to detect CNVs from exome and whole genome sequencing data. However, most of the tools which I …