Single cell RNA-seq : cell cycle plot and stemness plot
Hi
Is there any R package to produce plot a and b of the below Figure?
https://www.nature.com/articles/nature20123/figures/3
Thanks
single cell rna-seq
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You could do that with ggplot2 or even base R. Or do you mean a package to compute the metric that they're plotting? I assume that's something they just implemented themselves.
You can compute that metric with Seurat's
CellCycleScoring()function.See example here: https://satijalab.org/seurat/cell_cycle_vignette.html
That's a handy function!