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Stand alone balst+

I am doing stand alone blast i want set query coverage, how to get the query best hists above 60%

alignment sequence
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updated by h.mon h.mon • written by hemantcnaik • hemantcnaik

my query file vary with sequence size result all so showing less coverage to that sequence i am no getting proffer result to sequence simlarity

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written by hemantcnaik • hemantcnaik

1 answer

You may filter after blasting, if you use genomax suggestion, or you may use the -qcov_hsp_perc parameter (you may also want to use -max_hsps):

-qcov_hsp_perc <real, 0..100="">
Percent query coverage per hsp

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written by h.mon h.mon

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