Co-occuring mutations analysis
Is there any software that analysis co-occuring mutations in the dna? Or any database where I can find this type of data?
ngs
mutations
dna
• 2,187 views
•
link
written
by
onemoreuser
3
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to use hmmsearch to search a protein hmm in a DNA database
written by brgs 0I have a protein hmm and a DNA database and I want to know if the protein motif can be produced by this DNA sequence. …
-
Finding metagenomic short read sequences
written by eli_bayat 10Hello, I am looking for metagenomic sequencing data in fastq format in order to test my pipeline. I read that I can find these type …
-
Is there any specific reason to consider comutation analysis, regarding sars2 mutations?
written by 2001linana 4Hi. I was wondering, is there any specific reason to consider "co-mutation analysis", when working on SARS-CoV-2 mutations? There has been several articles which research …
-
Any tools for co-mutation analysis just like WGCNA on co-expression analysis
written by CY 77I know that WGCNA is widely used in co-expression analysis. I have a number of tumor samples and try to find significantly co-occurrent mutation across …
-
How can I compute if the co-occurrence of two TFBSs within a certain width in all promoters is larg…
written by JJ 77Hi, I have computed the number of co-occurrences of two TFBSs in all promoters in the human genome. [Previously][1], we have discussed how to calculate …
-
Information about control data
written by vivekruhela 3Hi, I am putting this question because I did not find any useful information from internet because of limited access. My question is related to …
-
Where to find all available co-crystallized protein-protein complexes
written by Hydrogen Bond 1Where can I find all available co-crystallized protein-protein complexes? Is there any database of all these complexes where I can download the PDB files separately?
-
Meta analysis of cancer gene expression
written by Stane 9Hello, Is there any online website/database with meta analysis of dis-regulated gene expression in cancers. I am not interested in specific cancer, I need something …
-
Difference in sequencing analysis between Blood-derived and Saliva-derived DNA Samples
written by SOHAIL 41Hi everyone, I have Raw WGS data from different origins such as Saliva and Blood DNA samples. My question is there any difference in quality …
-
Access SNPedia in Java
written by onemoreuser 3I'm accessing diferent databases to collect data for different variants found in a human sequence. One of the databases that I want to use is …
this question could mean almost anything. any software program including a function or two dealing with linkage disequilbrium technically meets this definition.
do you have a more specific question? perhaps relating to a given field such as cancer biology?
I'm sorry. Yes in the context of cancer: a tool/database that contains information of the effect that multiple variants will have on the patient disease instead of predicting the consequence for independent variants (like ANNOVAR and VEP).