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Cufflinks and StringTie

Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to identify the transcripts detected by both assemblers.

rna-seq assembly
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updated by Hussain Ather Hussain Ather • written by qudrat qudrat

Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to identify the transcripts detected by both assemblers.

And what's your question? Do you expect one of us to come over and sit next to you or are you going to try some things on your own?

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written by WouterDeCoster WouterDeCoster

1 answer

Use bedtools intersect to find the intersection between the two assemblies http://bedtools.readthedocs.io/en/latest/content/tools/intersect.html

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written by Hussain Ather Hussain Ather

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