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gtf file and rnaseq

Hello all I was wondering to ask whether there are any method to find common transcripts between two gtf file? I have produced gtf files from StringTie and I am interested in to proceed forward with common transcripts.

rna-seq alignment
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updated by Buffo Buffo • written by qudrat qudrat

2 answers

You can also create the transcript (and quantification) list with ballgown, then compare the lists.

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written by Buffo Buffo

you can do that simply using awk or fgrep

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written by ta_awwad ta_awwad

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