This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Stringtie and Cufflinks and Cuffmerge

Can Cuffmerge be used to merge different gtf files produced from Stringtie as I have fourteen gtf files from Stringtie

rna-seq assembly

1 answer

Yep. But if you look at the figures on https://ccb.jhu.edu/software/stringtie/index.shtml?t=manual you seen they suggest to use stringtie -merge.

Log in to answer this question.