This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Cufflinks analysis for transcriptome assembly

Hello all, I have six gtf files from six different sample and I want to merge all these six files to produce non-redundant set of transcripts. The gtf files were produced from Cufflinks.

rna-seq alignment
• 1,469 views • link
written by qudrat qudrat

Go ahead with the cufflinks pipeline.. use Cuffmerge

• 0 views • link
written by Prakash Prakash

As per the above; however, Cufflinks is outdated and has been superceded by Stringtie, produced by the same group.

• 0 views • link
written by Kevin Blighe Kevin Blighe

0 answers

No answers yet.

Log in to answer this question.

More posts like this