Hello all, I have assembled transcriptome using two different assembler Cufflinks and StringTie and now I want to identify the transcripts detected by both assemblers.

Hello all, I have assembled transcripts from a tissue using StringTie and I want to filter transcripts so that I can get rid of false …

Hello all I was wondering to ask whether there are any method to find common transcripts between two gtf file? I have produced gtf files …

Long reads technologies claim that their RNA-seq long reads are full-length transcripts, so transcript assembly is no longer needed. I am wondering what may be …

Hello all, I have six gtf files from six different sample and I want to merge all these six files to produce non-redundant set of …

Hello all, I removed all single single exon transcripts from each of the transcriptome assemblies using gffread tool (part of Cufflinks package): gffread transcripts.gtf -T …

Hello all! I have two file containing ten thousands of transcripts fasta sequences each with different ids and I am interested in finding common sequences …

When we merge two GTF file from two different sample, Is it true that Cuffcmerge lists common transcripts between two sample and Cuffcompare produce all …

Hi all, I used STAR and stringtie for mapping reads to reference genome and assembly. As you know, the generated assembled transcripts by stringtie are …

Hi all, I'm hoping to get some clarity on the best approach for analyzing my RNA-seq data. I've have read dozens of posts and articles …