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How to set FASTQ trimming parameters before de novo assembly of the birch chloroplast genome?
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2.1 years ago
oxfordsoccer • 10

How to set FASTQ trimming parameters before de novo assembly of the birch chloroplast genome? How much to cut and filter? On what facts to rely on? And is it obligatory to scaffold the resultant contigs and remove gaps before putting contig to the annotation engine?

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