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How do I make a schema with all described variants within a gene?

Hello. I would like to make a graphical representation of a transcript with all known variants. Something similar to image below.

Would anyone know how this can be done (apart from the "add custom tracks" of UCSC genome browser)?

Thank you in advance.

enter image description here

gene variants schema
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updated by WouterDeCoster WouterDeCoster • written by spanakorice • spanakorice

Well, 99.9% sure that this figure was made in powerpoint.

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written by ATpoint ATpoint

2 answers

I wrote a uniprot->SVG interface for a colleague. http://lindenb.github.io/pages/uniprot/paintsvg.html

you give a uniprot ID and fill a list of variant in a text area. You can later export and open it in inkscape.

enter image description here

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written by Pierre Lindenbaum Pierre Lindenbaum

This is also a convenient tool to quickly get such an image for human variant data: MutationMapper

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written by WouterDeCoster WouterDeCoster

Only for human data?

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written by GenoMax GenoMax

Oh yeah, that's probably the case (clarified).

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written by WouterDeCoster WouterDeCoster

Thank you. MutationMapper seems to do what I was searching for! I still have to try with my data.

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written by spanakorice • spanakorice

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