Gene network with expression data

Hi,

I want create gene interaction network like this. They have done with Ingenuity Pathways. Alternative to this was suggested ipathwayguide. Both are paid software. Are there any free tool to generate this image.

network rna-seq

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updated 3.1 years ago by Ram

• written 8.7 years ago by nirvana •

Assuming that you identify genes of interest separately (IPA will do all that internally) you should be able to use this tutorial: Network plot from expression data in R using igraph

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written 8.7 years ago by GenoMax

Thanks genomax!

There is also Cytoscape (now unlicenced I believe), in addition to SRINGdb mentioned by cpad.

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written 8.7 years ago by Kevin Blighe

Try stringdb package.

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written 8.7 years ago by cpad0112

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