Thank you for your answer! Actually I have been studying the page you mentioned for 2 days . I still have no idea which file contains the genotype data of a SNP (eg, sample 1 is AA ; sample 2 is AG, etc). Would you please give me some more hints ? That will save my life! (Apology for the hidden figure)
Reproduction eQTL GTex Box plot
HiI need to regenerate the eqtl boxplot graph forsome of my snps of interest.
I can see the eqtl graph in GTex portal but I cant export the image.
So, how can I downloadthe eqtl data from GTex portal ?
like this paper Figure 1 .
Thanks and regards
My post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/12769/how-can-i-download-the-snp-genotyping-information-from-gtex
1 answer
Hi! First of all, we cannot see the picture. Maybe you want to read this post on how to post figures on Biostars. Then, if the question is how to download the eqtl data from GTEx the answer is: Go to GTEx page, select the dataset you want and download it. While for some datasets you would need to register, maybe for you downloading some of the datasets under the line "Single-Tissue cis-QTL Data" should be enough. This depends on what you exactly need, but should be enough!
• 0 views
•
link
written
by
Fabio Marroni
Log in to answer this question.
More posts like this
-
How do you get the result of BLAST like this paper?
written by Riku •
-
Question about Finding SRA IDs
written by nickarsimet •
-
How to analyze RNAseq data
written by adR
-
Segway Heat map of parameters
written by christoph.neu •
-
Find the genomic position of CTCF binding site on DMPK gene
written by kspata
-
How to Get Nucleotide/Allele Frequency Spectrum From NGS SAM/VCF File
written by liaoyunshi •
-
Plot: Abundance at telomer region
written by popayekid55
-
What are the available methods to detect cross-sample contamination of NGS data?
written by MAPK
-
Plus and minus strands plotted together
written by firatuyulur
-
Reproduction GTex Box plot
written by peris
Hello 7441980!
It appears that your post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/12769/how-can-i-download-the-snp-genotyping-information-from-gtex
This is typically not recommended as it runs the risk of annoying people in both communities.
By the way, if you really want elaborate reponses then investing some effort is recommended. Please embed images properly, take care of the visual appearance of your post, check typos and show what you've tried.
Okay, you are right!
Please do not delete questions after a user already invested time to post an answer. It is not forbidden to cross-post, but usually not recommended. Don't worry, just leave the question as is.