Genome Snp Annotation for non human
Hi, I am using snpeff for annotation of Candida albicans. For RefSeq genome the snpeff annotation worked well. Now I am using different source for genome http://www.candidagenome.org/download/sequence/C_albicans_SC5314/Assembly22/current/ and SnpEff is not working. With this genome I am not able to annotate the SNPs.
Looking forward for some advice.
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You can build your own Candida database. Follow the directions here (section 10.6.2.)
Thank you for the reply I will try this