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nadiabeg.comsats
nadiabeg.comsats
Reputation:
10
Joined:
6.9 years ago
Last seen:
6.3 years ago
Latest posts by user
0 votes
0 replies
1.2K views
How to extract uniquely aligned paired end reads obtained from freebayes using diffrent parmeter combinations of samtools?
ngs read filtering samtools freebayes
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
0 replies
868 views
Variant calling and alignment stats
alignment snp
written by nadiabeg.comsats • nadiabeg.comsats
1 vote
2 replies
2.1K views
nucleotide blast of flanking sequences around SNPs
snp nblast
updated by David Gortler • David Gortler • written by nadiabeg.comsats • nadiabeg.comsats
0 votes
1 reply
0 views
Comment: C: Flanking sequence retreival
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
1 reply
0 views
Comment: C: Flanking sequence retreival
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
1 reply
0 views
Comment: C: Extract SNPs flanking sequences based on VCF and genome Fasta files
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
6 replies
2.3K views
Flanking sequence retreival
variants fasta sequence extraction
updated by finswimmer finswimmer • written by nadiabeg.comsats • nadiabeg.comsats
0 votes
0 replies
2.1K views
Bi-allelic SNP filtering
bcftools bi-allelic snps tetraploid genome
updated by Pierre Lindenbaum Pierre Lindenbaum • written by nadiabeg.comsats • nadiabeg.comsats
0 votes
0 replies
1.2K views
Filtering variants on the basis of average depth plus 3 standard deviation
variants ngs variant filtering
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
1 reply
1.0K views
How to create snpEff data base for newly assembled genome?
genome snp
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
1 reply
0 views
Comment: C: How to add path of cutadapt in trim_galore perl script?
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
3 replies
2.7K views
How to add path of cutadapt in trim_galore perl script?
next-gen
updated by padwalmk padwalmk • written by nadiabeg.comsats • nadiabeg.comsats
0 votes
0 replies
1.1K views
10x genomics linked reads-- preprocessing
alignment 10x genomics
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
0 replies
0 views
Comment: C: Using freebayes to call variants
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
0 replies
0 views
Comment: C: Variant using freebayes
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
0 replies
0 views
Comment: C: Getting uniquely aligned properly paired reads
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
2 replies
1.7K views
Variant using freebayes
freebayes 10x genomics tetraploid genome
updated by colindaven colindaven • written by nadiabeg.comsats • nadiabeg.comsats
0 votes
0 replies
0 views
Comment: A: Getting uniquely aligned properly paired reads
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
1 reply
0 views
Comment: C: Getting uniquely aligned properly paired reads
written by nadiabeg.comsats • nadiabeg.comsats
0 votes
8 replies
4.1K views
Getting uniquely aligned properly paired reads
10xgenomics properly paired unique reads
written by nadiabeg.comsats • nadiabeg.comsats
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