Hello everyone
I am trying to install cufflinks using the following command /build_dir/cufflinks-2.2.1.Linux_x86_64$ configure --prefix=/usr/bin/samtools/to/cufflinks/install --with-boost=/usr/bin/to/boost --with-eigen=/home/shaima/build_dir/to/eigen then it run fine with no error, so when I wrote make, it gave the following error make: *** No targets specified and no makefile found. Stop
Any help or suggestion
Thanks for time
1 answer
The part '--prefix=/usr/bin/samtools/to/cufflinks/install' does not look correct - take a look at the set-up tutorial here:
http://cole-trapnell-lab.github.io/cufflinks/getting_started/#building-cufflinks
Note that you can also download the pre-compiled binary executables using this direct link: http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz (SOURCE PAGE)
Before you then execute the cufflinks binary executable, add your copy of SAMtools to your path environmental variable, as follows: PATH=/Programs/samtools-1.3.1:$PATH
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