Hello everyone
I am trying to install samtools version 1.6 I downloaded it from the following resource [https://sourceforge.net/projects/samtools/files/samtools/1.6/]. Then I run the following command ./configure
, so it came fine with no error. Then I run make, it came fine with no error. When I run make install
. It gave the following error shaima@sarkarlab-MS-7885-Invalid-entry-length-16-Fixed-up-to-11:~/Downloads/samtools-1.6$ make install, the error is mkdir -p -m 755 /usr/local/bin /usr/local/bin /usr/local/share/man/man1
install -p samtools /usr/local/bin
install: cannot create regular file '/usr/local/bin/samtools': Permission denied
Makefile:292: recipe for target 'install' failed
make: *** [install] Error 1
I appreciate your help and time
2 answers
I did it, but now gave me the following error cd htslib-1.6 && make htslib_static.mk
make[1]: Entering directory '/home/shaima/Downloads/samtools-1.6/htslib-1.6'
sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk
make[1]: Leaving directory '/home/shaima/Downloads/samtools-1.6/htslib-1.6'
make: Nothing to be done for 'all'.
If you have administrator privileges (and therefore can use sudo) you can also try to install samtools from your package manager. For instance on Debian and Ubuntu: sudo apt install samtools. It may not be the latest version, though backports often get eventually provided.
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