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Cuffflinks installation problem

Dear Sir,

I am trying to install cufflinks-2.2.1,

i have downloaded and installed boost version 1_55_0 , samtools 0.1.19

cufflinks configured properly

I am facing problem with make

Make error :

Makefile:1418: recipe for target 'abundances.o' failed make[2]: * [abundances.o] Error 1 make[2]: Leaving directory '/home/rnaseq/cufflinks-2.2.1/src' Makefile:258: recipe for target 'all-recursive' failed make[1]: [all-recursive] Error 1 make[1]: Leaving directory '/home/rnaseq/cufflinks-2.2.1' Makefile:196: recipe for target 'all' failed make: ** [all] Error 2

Please, help me in installing cufflinks

rna-seq
• 2,931 views • link
written by sukesh1411 • sukesh1411

2 answers

If you are not particular about building, the below should help

wget -c http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz

tar -xvzf cufflinks-2.2.1.Linux_x86_64.tar.gz

export PATH="/home/rnaseq/cufflinks-2.2.1.Linux_x86_64":$PATH
• 1 views • link
updated by GenoMax GenoMax • written by Jeffin Rockey Jeffin Rockey

Thankyou Sir ! It worked :)

• 0 views • link
written by sukesh1411 • sukesh1411

Hi Sukesh1411, please use ADD COMMENT to reply to an earlier answer, as such these threads remain logically structured and easy to follow. Thanks!

• 1 views • link
written by WouterDeCoster WouterDeCoster

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