Or use a package manager like anaconda.
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Hello. I am a newbie in bioinfomatics. I have downloaded bowtie 2 and type 'make' to install. The computer gave me messages below.
Is bowtie2 installed properly? and what is fatal errors?
-------
1 error generated.
In file included from bowtie_build_main.cpp:25:
In file included from ./ds.h:30:
./threading.h:29:11: fatal error: 'tbb/mutex.h' file not found
include <tbb/mutex.h>
^~~~~~~~~~~~~
1 error generated.
make: [bowtie2-build-s] Error 1
Also, I tried installing tophat 2, but 'make' does not work. it gave me this message.
$ ln -s ~/tophat-2.1.1.Linux_x86_64/tophat2
ln: ./tophat2: File exists
kimh2@XXXXX ~/desktop
$ cd tophat-2.1.1.Linux_x86_64
kimh2@XXXXX ~/bin
$ ./configure --prefix=/path/to/tophat_base_dir --with-boost=/path/to/boost_prefix_dir
-bash: ./configure: No such file or directory
Anybody gives me some advice? I am learning ABC for bioinformatics, so please give me advice to follow easily.
Thank you.
You have not installed tbb library. You have following options.
tbb off as last resort (make NO_TBB=1)Finally the advice you should take to heart:
Avoid using TopHat2 for any new projects. Use STAR, BBMap or any of other current splice aware aligners.
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