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read simulation and quantification
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3.5 years ago
snishtala03 • 10


I have fasta sequences of 7 viral RNA transcripts. I need to see if I can recover the correct counts of these transcripts.

I am guessing I will first have to use a software ( like polyester or rsem) to generate simulated fastq files for these transcripts and then use a transcript assemble software (like trinity or stringTie) to quantify them.

Please suggest if this is the right way of doing it and tools I can use to get my results?

Thank you for your help!

RNA-Seq simulation quantification fasta • 602 views

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