How to calculate the depth of coverage on a BAM file generated from Pacbio Targeted Longread sequencing? In short-read paired-end sequencing, GATK DepthofCoverage gives the …

I have SNPs data in the form of minor allele frequency of different populations, how to calculate the fst test using this data and can …

> I have haplotypes (CYP2D6.1, CYP2D6.2, CYP2D6.3, CYP2D6.4, CYP2D6.5, > CYP2D6.6) How do I calculate the haplotype frequencies these haplotypes in 1000 genome populations?

I have more than 800 snps with rs ids, i want to calculate the allele frequency of these snps in British (GBR) population from 1000 …

Is there any way to calculate the mean coverage of each amplicon in a whole run (in 16 or 32 samples)?

1) What is the overarching challenges in the assembly algorithms? 2) How different algorithms handle local repeats or segmentation duplicates in the genome? 3) How …

hi I am new to NGS. In a targeted re sequencing experiment using molecular inversion probes. how can we calculate the Target coverage (depth in …

Hi all, I would like to know how can I can calculate sequencing depth for amplicon sequencing. I am conducting a microbial survey sequencing 16S …

I am using Ion torrent for sequencing. In Torrent Browser Analysis Report read depth always shown as blank after complete sequencing. Why? What I am …

<p>I recently received a batch of data from a targeted sequencing (50 genes, human) experiment. The sequencing was targeted on all exons of these 50 …