Minor allele frequency and fst test
I have SNPs data in the form of minor allele frequency of different populations, how to calculate the fst test using this data and can we load such data in plink 1.9?
My data format:
SNP Ashkenazi Jewish_G Finnish_G Non-Finnish European_G Other_G African/African American_G Latino_G East Asian_G
rs2234922 0.1448 0.1567 0.1995 0.1965 0.3388 0.1076 0.1253
rs3812718 0.5035 0.5446 0.5507 0.5543 0.3539 0.4654 0.5633
rs730012 0.2862 0.3267 0.3012 0.2758 0.0858 0.184 0.1465
rs2297480 0.2586 0.283 0.2545 0.2629 0.2998 0.3597 0.6996
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Abdul Rafay Khan
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