Question: How to convert population SNPs frequency data into Plink format?
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How to convert population SNPs frequency data into Plink format?

My format:

>  SNP Ashkenazi Finnish   European  Other African/African American  Latino    East Asian
>     rs2234922   0.1448  0.1567  0.1995  0.1965  0.3388  0.1076  0.1253
>     rs3812718   0.5035  0.5446  0.5507  0.5543  0.3539  0.4654  0.5633
>     rs730012    0.2862  0.3267  0.3012  0.2758  0.0858  0.184   0.1465
>     rs2297480   0.2586  0.283   0.2545  0.2629  0.2998  0.3597  0.6996
ADD COMMENTlinkeditmoderate 8 months ago Abdul Rafay Khan • 1000
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Maybe I misunderstand your question, but plink takes as input individual genotype data, and you have data of allele frequency aggregated by population, so you cannot "convert" your data to plink format, since in your data you are missing a lot of information that plink needs.

ADD REPLYlinkeditmoderate 8 months ago
Fabio Marroni
♦ 2.2k

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