How to convert population SNPs frequency data into Plink format?
How to convert population SNPs frequency data into Plink format?
My format:
> SNP Ashkenazi Finnish European Other African/African American Latino East Asian
> rs2234922 0.1448 0.1567 0.1995 0.1965 0.3388 0.1076 0.1253
> rs3812718 0.5035 0.5446 0.5507 0.5543 0.3539 0.4654 0.5633
> rs730012 0.2862 0.3267 0.3012 0.2758 0.0858 0.184 0.1465
> rs2297480 0.2586 0.283 0.2545 0.2629 0.2998 0.3597 0.6996
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Abdul Rafay Khan
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Maybe I misunderstand your question, but plink takes as input individual genotype data, and you have data of allele frequency aggregated by population, so you cannot "convert" your data to plink format, since in your data you are missing a lot of information that plink needs.
Is there a good alternative to Plink when dealing with population allele frequency?