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Luca Beltrame
Luca Beltrame
Reputation:
250 (Trusted)
Joined:
13.1 years ago
Last seen:
5.9 years ago
Location:
IRCCS Istituto di Ricerche Farmacologiche "Mario Negri", Milano, Italy
Latest posts by user
0 votes
0 replies
1.3K views
Correcting variant allele fraction using tumor purity (experimentally measured)
variant calling sequencing cancer snp next-gen
written by Luca Beltrame 25
0 votes
0 replies
0 views
Comment: C: Aggregate multiple VCFs into a single MAF or generate a multi-sample MAF from a
written by Luca Beltrame 25
0 votes
0 replies
967 views
Generate coordinates of specific length between two BED features
bed bedtools
written by Luca Beltrame 25
0 votes
0 replies
0 views
Comment: C: Merge regions in a BED but only if they share the same value (copy number) in a
written by Luca Beltrame 25
0 votes
2 replies
1.7K views
Merge regions in a BED but only if they share the same value (copy number) in a column
bedtools copy number bedops
updated by ATpoint 9.1K • | written by Luca Beltrame 25
4 votes
3 replies
7.6K views
Aggregate multiple VCFs into a single MAF or generate a multi-sample MAF from a multi-sample VCF
sequencing file-formats maf conversion
updated by Cyriac Kandoth 609 • | written by Luca Beltrame 25
1 vote
0 replies
3.7K views
Proper way to plot VCF files from structural variant callers
sequencing visualization circos
written by Luca Beltrame 25
0 votes
2 replies
2 views
Comment: C: Targeted NGS: amplicon length vs read length
written by Luca Beltrame 25
1 vote
7 replies
7.2K views
Targeted NGS: amplicon length vs read length
sequencing next-gen amplicon
updated by WouterDeCoster 4.8K • | written by Luca Beltrame 25
0 votes
2 replies
0 views
Comment: C: Quality Control Software For Targeted Sequencing?
written by Luca Beltrame 25
3 votes
5 replies
4.4K views
Quality Control Software For Targeted Sequencing?
ngs analysis sequencing software
updated by brentp 2.4K • | written by Luca Beltrame 25
0 votes
1 reply
0 views
Comment: C: Build Phylogenetic Trees From Bam Files
written by Luca Beltrame 25
3 votes
4 replies
7.8K views
Build Phylogenetic Trees From Bam Files
sequencing bam
updated by Fwip 50 • | written by Luca Beltrame 25
0 votes
0 replies
0 views
Comment: C: Snp Calling Of Tcga Data Using Samtools
written by Luca Beltrame 25
0 votes
0 replies
0 views
Comment: C: Convert Cds-Based Coordinate To Genomic Coordinates
written by Luca Beltrame 25
0 votes
0 replies
0 views
Comment: C: Convert Cds-Based Coordinate To Genomic Coordinates
written by Luca Beltrame 25
2 votes
5 replies
7.1K views
Convert Cds-Based Coordinate To Genomic Coordinates
genome mapping
updated by Emily 2.4K • | written by Luca Beltrame 25
0 votes
0 replies
0 views
Comment: C: How To Represent Two Different Indels At The Same Position In A Multisample Vcf?
written by Luca Beltrame 25
0 votes
0 replies
0 views
Comment: C: How To Represent Two Different Indels At The Same Position In A Multisample Vcf?
written by Luca Beltrame 25
1 vote
1 reply
248 views
Comment: C: How To Represent Two Different Indels At The Same Position In A Multisample Vcf?
written by Luca Beltrame 25
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