what library preparation kit was used in sequencing process?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Fastq with 2 presence of adapter sequences
written by Armando •
-
Determine kit used for library preparation for whole exome sequencing from fastq files
written by Harinder •
-
Trim NEBnext Adapters with trimmomatic - Same as TruSeq adapters?
written by alexgoro13 •
-
How to remove reads from fastq flle that match to a set of reads in my fasta file?
written by MAPK
-
How to know which illumina adapters trimm using BCL files
written by patrick-douglas •
-
Trimming Adaptor in Small RNA Analysis
written by ebrahimiet •
-
Illumina adaptor to be trimmed from fastq RNAseq files
written by ebrahimiet •
-
About possible bias due to different experimental design
written by biotech
-
what is the Hiseq 2000 adaptor sequences
written by hana
-
How Can I Find Out Unknown Illumina Barcode.
written by samsara
I don't think so, but have a look:
https://support.illumina.com/help/SequencingAnalysisWorkflow/Content/Vault/Informatics/Sequencing_Analysis/CASAVA/swSEQ_mCA_FASTQFiles.htm
You can try to see by FASTQC tool what is the length of one read, if it's PE or SE, maybe there are some adaptors left - and try to fit with Illumina kits.
i did it but there is no adapter.
how your reads are named? Is it SE or PE? What is the length of read?
it is PE reads and 2*100
When you run fastQC it will also tell you which illumina technology was used (like illumina 1.9 or illumina 1.5+). This is not a clear answer but can allow you to search which are the library preparation kits for such technologies, perhaps there is only one (i'm guessing).