Hi, I have finish run annotation using eggnogmapper. Outputs are .annotations, .hmm_hits and .seed_orthologs files.

How can I create meaningful charts showing percentages of each functional categories and species?

I also have tried annotation using Trinotate resulted an output of xml file. Same question, how to create meaningful charts showing percentages of each functional categories and species?

I am beginner in bioinformatic. Would appreciate a more details answer.

Thanks in advance.