Paramlink and liability classes

Hi, I'm conducting linkage analysis with the paramlink package and would like to use liability classes for penetrance as I am working on an age related disease. I haven't been able to find a way to do this yet, any ideas how would be most helpful. Thanks.

paramlink r linkage

• 1,261 views • link

written 9.4 years ago by emyli •

0 answers

No answers yet.

More posts like this

Convert genepop to bayescan format
written 1.6 years ago by eaabbott0 •

Hi all, I'm working with RAD-seq data and have a genepop (.gen) file that I'd like to convert to bayescan format (.geste). I have used …
Output file from samtools index is empty
written 4.8 years ago by dave10808 •

Hello, I haven't been able to find anything related to this question. For some strange reason after indexing .BAM file the output .BAI file is …
Comparative genomic analysis
written 7.0 years ago by Baby Bioinformatician

Hi Biostars, I am conducting a comparative genomic analysis of some metabolic pathway in bacteria. I have so far been using blast to identify orthologous …
Affymetrix Soybean Gene 1.1 ST Array PROBES IDs to Ensembl transcripts IDs
written 8.3 years ago by gaby_santos •

Hi! I am trying to perform a differential expression analysis of microarray Soybean data, I wanted to use Ensembl ID information but I haven't been …
Merlin ped file issue
written 9.4 years ago by emyli •

Hi, I'm trying to conduct parametric linkage analysis using SNP data and merlin. I'm using the basic command used in the merlin tutorial: merlin -d …
Appropriate to apply RUVSeq to exon bin counts for DEXSeq?
written 9.6 years ago by Adamc

Hi, I have been working on an RNA-Seq dataset on which I applied RUVSeq (ruvr method) at the gene-count level to account for some unexpected …
Cell cycle expression/ChIP in mouse
written 10.3 years ago by jotan

I'm starting a project to characterise a mitotic specific histone modification in mouse. I would like to gather some existing data of RNA/ChIP-seq during various …
R unable to import ped File - paramlink package
written 10.7 years ago by Mk •

Hi, I have few plink ped files with me. The file format: Family ID, Individual ID, Paternal ID, Maternal ID, sex, Phenotype I am trying …
R functions that extract the ORF from a sequence
written 10.9 years ago by peter.durr •

Hi everyone I am working within R and need to extract the open reading frame (ORF) from a number of viral sequences Somewhat to my …
Comparing coexpression results between two datasets
written 11.4 years ago by brendan.innes •

Apologies if this has been asked - I assumed it would have been, but I can't seem to find it. I am trying to do …