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Alignment of genomic data

Hello, I have fungi genome sequenced data in FASTA format which is 20mb in size and I want to align my data with Diaporthe ampelina which is 40mb in size. I am looking for a tool apart from BLAST. I have already tried YASS tool but it does not work with such large data, it does work finely with small data, I am looking for similar type of tool which can work with my large data.

Thank you, Meetali

blast sequence genome
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updated by Felix Francis Felix Francis • written by mittu1602 mittu1602

2 answers

Thank you Felix,

MUMmer worked too well for my work.

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written by mittu1602 mittu1602

If an answer is helpful, upvote it. If the answer resolved your question, mark it as accepted.

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written by WouterDeCoster WouterDeCoster

try LASTZ ? https://www.bx.psu.edu/~rsharris/lastz/

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written by Pierre Lindenbaum Pierre Lindenbaum

Hello, Pierre LASTZ worked too but the result files were not well interpreted, Thank you.

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written by mittu1602 mittu1602

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