How to identify the different varieties of same species in Plants?
Dear All I want to establish a system to differentiate between the varieties of same species(specifically plants). Please let me know if anyone has done it with any protocol.
Best Regards Shahzad
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Matteo Schiavinato
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Shahzad •
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Shahzad •
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Since this is exactly my project as well (lol) I would suggest you to first have a look to:
- differential expression if you have RNASeq data
- variants if you have DNA Seq data
- chromosomal rearrangements if you have assemblies available
- GC content and contamination content
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Sounds like a very good name for a phd project :D It depends on what data you have!
@Macspider Thank you for the reply. I am starting this project. So, I can opt any method. I have experience with Next Gen data and also have molecular biology skills. I just want to enlist all the options which can lead to success of this project.