Are there any new/novel R packages and other software to compare a 100 of VCF files?
Are there any new/novel R packages and other software to compare a 100 of VCF files? Tried GATK and VCF tools and nextGene. Need a better solution for a hunderds of VCFs.
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genomicswolf •
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Could you be more specific on what you aim to achieve? "Compare" is quite generic.
find differences in vcfs, thx
Oh right now I understand. Differences.
Could you be more specific on what you aim to achieve? "Differences" is quite generic.
Not new and not sure whether it fits your needs but did you take a look at the VariantAnnotation bioconductor package?