Are there any free Linux software tools which can do FASTA sequence elongation, consolidation and error fix similar to Nextgene software?

software elongation consolidation

• 52 views • link

written 7.5 years ago by bioinformatics_kiev 0

0 answers

No answers yet.

More posts like this

Are there any tools for mutational analysis of viruses?
written 2.5 years ago by joey 1

Hi. I just recently sequenced a viral genome and wanted to analyze the SNPs in the sequence. Are there any free tools or software for …
free(): invalid next size (normal) Aborted (core dumped)
written 7.4 years ago by Mithil Gaikwad 5

I am using gffread software, for obtaining fasta sequence from gtf file, gffread -w transcripts.fa -g /path/to/reference_genome/genome.fa 'input/transcript.gtf but I am facing an error > …
What SEED MyRAST annotation functions will work on Linux Mint correctly?
written 7.5 years ago by bioinformatics_kiev 0

I am running a bash code on Linux machine: svr_psiblast_search < pilon_output.pilon.fasta > results.tab and get: s500 Error detected by service. at /usr/lib/myrast/lib/ClientThing.pm line 686 …
What web software can do gap filling, error correction, elongation, consolidation and qual improvme…
written 7.8 years ago by uk_plant_parasite_genome 0

What web or desktop software can do the job of gap filling, error correction, elongation, consolidation and general quality improvement of the transcriptomes coming from …
Problem while using BPGA-Version-1.3 for pan bacterial genome analysis
written 8.6 years ago by ymir.dx 0

I am trying to find similar and non-similar genes by analyzing whole genomes of 147 strains. I am using BPGA-Version-1.3. The problem which I am …
What to do if there are many unmatched reads after mapping?
written 9.4 years ago by matveyspr 1

What to do if there are many unmatched reads after mapping (WGS alignment)? Tried elongation and error reducing condensation in NextGene software and no help. …
Is there any good software which can substitute Lasergene DNAStar, NextGene, and CLC?
written 9.7 years ago by lukdubkvas 0

Is there any good software which can substitute Lasergene DNAStar, NextGene, and CLC? What tools are the most adequate to align microbial genomes, call variants, …
Are there any new/novel R packages and other software to compare a 100 of VCF files?
written 9.9 years ago by genomicswolf 2

Are there any new/novel R packages and other software to compare a 100 of VCF files? Tried GATK and VCF tools and nextGene. Need a …
How to run multiple alignment and SNP-calling of WGS data in .gb and .fasta using Python or Ruby/J…
written 11.5 years ago by fashiondesignrussian 6

<p>How to run multiple alignment of WGS data in .gb and .fasta formats using Python or Ruby/Java? Please advise some packages and tutorials. I could …
Nextgene As An Alignment And Variant Calling Pipeline
written 15.2 years ago by Biomed 500

<p>Has anyone used NextGene/SoftGenetics and hopefully compared it with some other popular open source pipeline like BWA+ Picard + SAMtools/GATK? Are there any obvious pitfalls …