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Getting BP, MF and CC from GO IDs

HI,

I have a list of GO Ids and I want to know their BP, MF and CC. Is it possible to get those BPs, MFs or CC either through online resource or in R. Thanks in advance.

gene ontology
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updated by EagleEye EagleEye • written by EVR EVR

2 answers

Check out

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written by Michael Dondrup Michael Dondrup

Using GeneSCF, you can download complete GO (BP,CC,MF) as simple text file along with the genes in each process.

Gene Set Clustering based on Functional annotation (GeneSCF)

Example like this.

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written by EagleEye EagleEye

Bu the input file requires either Gene Id or Gene Symbol. In my case i have only GO iDs. How can your tool can be modified to extract ontology from GO IDs

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written by EVR EVR

Use 'prepare_database' module from GeneSCF.

./prepare_database -db=GO_all -org=hsa

The above biostar page for GeneSCF 'Two step process' explains in detail.

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written by EagleEye EagleEye

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