More posts like this
-
Multi Alignment - How to deal with uncertainty?
written by andrebolerbarros •Hi everyone, I have samples which align with two different genomes with a great degree of similarity. Is there any way to handle/correct/take into consideration …
-
Parsnp Error. Why?
written by k.kathirvel93Hi EveryOne, I am using Parsnp to extract all the core geome SNPs from my bacterial genomes. Here is the command line `./parsnp -g ref/PAO1.gbk …
-
Use Plink to calculate OR for homozygous ?
written by lmobuchon •Hi everyone, I would like to calculate OR for heterozygous and homozygous for the risk allele of the SNP I identified by GWAS. I only …
-
Ubuntu 14.04 automatically going to power saving mode?
written by k.kathirvel93Hi everyone. I need to know why my ubuntu 14.04 is automatically going into power saving mode ? and How can I stop that? Need …
-
Cluster species into taxonomic groups by tax ID
written by Juan CorderoDear community, I would like to be able to cluster all species from InParanoid DB into different groups, at different evolutionary distance cutoffs, using tax …
-
Calculating variant frequency in R
written by nkaboHi, I have approximately 1200 variants for 390 genes in an excel document and I want to find frequency of each variant and add it …
-
Fetching clinicalSignificance from dbSNP and eutils
written by tjohnpok •Hi, I am a complete newbie into bioinformatics and would like to know how can I specifically fetch the clinicalSignificance field from the eutils page …
-
Segregatin sites per nucleotide, Watterson Estimator, Nucleotide Diversity
written by ama.biology •<p>Hello everyone!</p> <p>I need to create an script that computes the <strong><em>number of segregating sites per nucleotide</em></strong>, the <strong><em>Watterson estimator (θ)</em></strong>, and the <strong><em>nucleotide diversity …
-
Downloading Sequences From Ensembl Using Ids
written by jaip217 •<p>Hi Everyone,</p> <p>Quick question: Does anyone know how to download a batch of sequences from Ensembl using their Ensembl Identifiers? I know I can do …
-
Extracting Sequence From A 3Gb Fasta File
written by Divya •<p>Hi, <br /> How to extract fasta sequence from an huge 3gb fasta file by giving sequence id as input using perl, Thanks in advance.</p>
May be this question shouldn't be here. Even more There is no link between your Post and the tags.
What do you suggest, which tags should I put?
The easiest would be: don't use excel ever (for data analysis). You could save it as a tab delimited text file and use perl on that.
Thank you for your suggestion, I converted them. I want to select the line that has the typed word in it and take the whole line. After taking the line, I want to write it into a different text line. Is there a way to do it i Perl?
I have no perl experience, but this sounds like a quite common application :p (I guess you could also use the gnu tool grep)
I'll look at that, I know it is a bit common and easy, but I have no perl experience :) thank you
If you are trying to delete this thread, that's bad practice. It can stay like this (answered).
I'm trying to delete it because this question has no relation to bioinformatics. It also reads like a homework question "I want to do this task in perl but I have no experience in perl" - why perl if it's not homework?
I see. I'm not sure whether deleting is appropriate but understand your reasons.
Have a see on cpan for an excel parser; this probably isn't the venue for your request
I'll check that, thank you