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Downloading Sequences From Ensembl Using Ids
Hi Everyone,
Quick question: Does anyone know how to download a batch of sequences from Ensembl using their Ensembl Identifiers? I know I can do this using the Perl API but I would like to avoid doing this. I have .csv file I got from Ensembl but I can't figure out how to download them.
Thanks in advance!
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3 answers
Have you tried using the Biomart (http://www.ensembl.org/biomart/martview/6e0b7f8b692454fdd5a5417af2de147c) interface for batch queries?
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Biomart restricts on species, for multiple id from different species, check here: https://rest.ensembl.org/documentation/info/sequence_id
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