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How To Download All Ncbi Gtex Eqtl Data

Does anyone know how to download all the NCBI GTeX eQTLs? From the browser it is trivial to search for eQTLs from a list of SNPs or other criteria, but I can't figure out how to actually download/access ALL the data. Thanks for the help!

ncbi
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updated by David Quigley David Quigley • written by Dr.Bunsen • Dr.Bunsen

1 answer

  1. Select an experiment. Don't specify any other parameters (RS numbers, etc).
  2. Click Download Text.
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written by David Quigley David Quigley

Thanks, yes I discovered this option too. The problem is that there are around one hundred experiments, so I was hoping to avoid doing this manually. By experiments I'm assuming you mean "phenotypic traits"?

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written by Dr.Bunsen • Dr.Bunsen

Odd; I only see 7 distinct analysis IDs with four distinct pubmed IDs between them. What am I missing?

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written by David Quigley David Quigley

Thanks David! Sorry for the confusion, I see what you mean now.

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written by Dr.Bunsen • Dr.Bunsen

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