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VCF - Annotation

Hi,

I would like to annotate my vcf file.I have mapped my Raw data of Pseudomonas_aeruginosa using BWA and their variant were called using samtools mpileup. now i wish to annotate my vcf file to find out whether any one of my variants found in the coding reagion. i tried different tools for annotation but many dont have the data base regrinding Pseudomonas_aeruginosa for annotation purpose. if any one have any idea for annotating the vcf file kindly help me

sequencing vcf annotation ngs
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updated by Emily Emily • written by manojkumarbioinfo manojkumarbioinfo

1 answer

Have you tried the Ensembl VEP?

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written by Emily Emily

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