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SVM based VCF filter

Hi,

I would like to know is there any free SVM based tools for filtering my VCF file. if its there kindly me tell me.

ngs svm vcf
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updated by Mike Mike • written by manojkumarbioinfo manojkumarbioinfo

An SVM-based tool for filtering VCF files? What exactly are you trying to accomplish?

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written by Devon Ryan Devon Ryan

i just wanted to filter out my variants based on true positive and false positive. i have a separate data of true positive one . now i want to filter out my variants.@DevonRyan

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written by manojkumarbioinfo manojkumarbioinfo

1 answer

You can try GATK's VQSR package. Variant Quality Score Recalibration (VQSR)

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written by Mike Mike

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