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read density plot in R

Is there an R package that can generate read density plots that are commonly used for ChIP-seq profiles? I know there are a few command-line tools like deepTools, but I would like to have a little more flexibility. It can probably be done using GenomicRanges and rtracklayer, but I am guessing there is already a package that streamlines the process. Any suggestions are welcome.

Examples: enter image description here enter image description here

r visualization plot
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updated by Sinji Sinji • written by igor igor

1 answer

ChIPseeker, Genomation, and SeqPlots might be good places to start.

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written by Sinji Sinji

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