As you know BioGrid is a database that contains the information of relations between genes, i.e. network of genes. Now, I was wondering if we have such database for metabolite data. I appreciate if you would help me. Indeed, I want to make a network between metabolites and I do not know any database that I can use.
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written
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Na Sed
3 answers
I hope this will help you:
It's a paper-summary from 2015:
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0462-y
A list of different databases:
http://metabolomicssociety.org/resources/metabolomics-databases
A shorter list of databases:
You are not the first person who was going to create such a database, some people shared their views on the topic:
You can take a look at ipath2 , reactome and consensuspathdb, they should be having metabolic pathways for gene-gene relationships to consequent pathways. Even IPA has it but you need a commercial license for IPA.
WikiPathways is an extensive pathway database which also contains many metabolic pathways.
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