I used first two database but the number of target gene is far lower than those I've collected by literature search. But I got a large list of protein from last database. I am now controlling each of Target genes. Thank you very much.
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Curse those biologists for continually generating new data :) Also - which organism?
Seemingly E2F is a family of TFs, not a single one, that might explain the multitude of targets. If you could focus your study on a specific factor, that might help your progress. Otherwise, what was asked before about TF-(BS) databases applies here too: http://biostar.stackexchange.com/questions/6507/best-database-of-transcription-factor-binding-sites