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How to validate a model obtained from Modeller

I have some difficulties in reading result from Modeller. After obtaining the model from Modeller and use Gnuplot, I have a graph of model and template. However, I don't know how to read the graph. I'm new to bioinformatics. Can anyone help me to briefly explain how to validate results?? Thank you very much for your help.

3d-structure modeller protein
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updated by Ram Ram • written by thaonguyen8310 • thaonguyen8310

I think in the strict sense the only way to validate a predicted 3D structure is to get the experimental 3D structure, isn't it? Also please be more specific, which plot exactly did you get? What is the RMSD of your structure, are there other scores? Another approach might be to use some other prediction servers (e.g. i-Tasser) and see if the results agree.

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written by Michael Dondrup Michael Dondrup

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