batch program to convert nucleotide into protein
3 answers
See a related question: All Possible Protein Sequence From A Nucleotide Sequence
Look for the script/service dna2pep.py that you can find in the VirtualRibosome free programs
It works in batch with fasta files, with the choice of looking or not for ORF
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Antonio R. Franco
For a single line command, it would be easiest to write a loop or cat them.
For the actual translation, if you have a lot of data, I recommend translate6frames from BBMap, as it is extremely fast:
translate6frames.sh in=file.fna out=file.faa
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Brian Bushnell
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