Hi, can you help me please with choosing the command line program/tool which is able to construct phylogenetic tree from 500 sequences in few minutes on standard machine/notebook (better is only one core).
I tried: raxmlHPC-SSE3 and its 17min for 200 sequences. End for 400 sequences is in hours. I tried some others but with similar results. Is there something wrong or is there some program/tool that can do that faster?
Thank you very much.
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onpelikan •
Thank you very much. The FastTree is really fast. But some problem with the root occurs. Here is another question about it: FastTree - how to remove trifurcation inside tree?
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