Which Phylogeny Software Should I Used To View Tree Of 5000 Sequences?
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What is a good phylogenetic tree display program for large data sets?
i have around 5000 protein sequences,i have .nw(Newick format) file, which generats phylogenetic tree, which graphical softwares should i used?that gives me HD trees i tried MEGA,FigTree softwares,but they hang many times
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Niek De Klein
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Sagar Nikam
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Sagar Nikam
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I personally like http://itol.embl.de/, it can easily handle that data (has a 10.000 sequences limit) and it is very nice to view. Takes a bit of time to figure out how to get the colors going for great viewing, but that's totally worth it.
However, many more very good viewers were suggested on my question here, and for huge tree viewers here.
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Ram
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Niek De Klein
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Niek's answer is good (and suggests we should close this as a duplicate).
Hello ,Sagarnidam123! I happened to see your question here.Could you tell me which aligment tool did you choose to align such a lot of suqeuences ? I also have a large amont of sequences need to be aligned , I tried clustalw and clustal-omega, but it seems that the software can not handle so many suquences and comes to an termination .Thanks a lot!