fastq to full genome
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actually u can easily convert fastq file to fasta with generation of qual file
awk 'BEGIN{P=1}{if(P==1||P==2){gsub(/^[@]/,">");print}; if(P==4)P=0; P++}' input.fastq > output.fasta
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Hi, you might not get the desired answer because your question is ambiguous, please explain which data you have. If you have fastq reads and a reference sequence, what is the difference of your reference to a 'full genome'? Do you want to assemble the reads?
i want to assemble my reads into full length.