This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Convert several contig file of whole genome sequence into a raw nucleotide sequence

I have an assembled genome of many contigs in a fasta file which I get from a sequencing company. I want to make this all set of contigs into a full genome sequence fasta file without contig, is it possible? Is there any tool or program? A contig is a contiguous sequence of a genome based on a reference but I want the raw nucleotide sequence of Genome. Thanks.

allignment genomics wgs
• 956 views • link
updated by akshay • akshay • written by microorganism_001 • microorganism_001

1 answer

Your genome was assembled up to the contig level, possibly due to data limitations. If you wish to enhance contiguity, you can employ reference-based scaffolding using tools such as RagTag, especially if a reference genome is available.

• 0 views • link
written by akshay • akshay

Log in to answer this question.

More posts like this