extract gene from MCL out
Hai there
I want to find HGC (Homologous Gene clustering) of a species . I started with BLAT to align genes of my species against each other. MCL software (Markov Clustering Algorithm) was used to create HGSc from BLAT alignment. I got an file "fname-out" from MCL. I want to extract gene sequence of each cluster .Is there any software or programme for this?
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head fname-outshould give you an idea of what the file contains. You could have identifiers as clusters in the file, with which you can query a gene database in NCBI or EMBL and extract sequences with a simple script.Until you peek into the file, your next steps can not be easily determined by others.